Transcript: lnc-ATG5-7:2

Basic information

LNCipedia transcript ID: lnc-ATG5-7:2 
LNCipedia gene ID: lnc-ATG5-7
Location (hg19): chr6:106442190-106442917
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 728 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000089491.1|FTMT22200008005.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -834.4375 non-coding 
CPAT coding probability 7.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG5-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATG5-7:2
5.0 lnc-ATG5-7:2
5.1 lnc-SNX3-28:2
5.2 lnc-ATG5-7:2