Transcript: lnc-ATG7-2:1

Basic information

LNCipedia transcript ID: lnc-ATG7-2:1 
LNCipedia gene ID: lnc-ATG7-2
Location (hg19): chr3:11760915-11770134
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 410 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000426495; ENST00000426495.1; AC090939.2-001; OTTHUMT00000339235.2; NONHSAT087986
Alternative gene names: ENSG00000224386; AC090939.2; ENSG00000224386.1; OTTHUMG00000155263.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATG7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATG7-2:1
3.1 lnc-ATG7-2:1
4.0 lnc-ATG7-2:1
4.1 lnc-ATG7-2:1
5.0 lnc-ATG7-2:1
5.1 lnc-PPARG-2:1
5.2 lnc-ATG7-2:1