Transcript: lnc-ATG9B-2:1

Basic information

LNCipedia transcript ID: lnc-ATG9B-2:1 
LNCipedia gene ID: lnc-ATG9B-2
Location (hg19): chr7:150716924-150721586
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1550 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000473409.1; ATG9B-005; OTTHUMT00000351547.2
Alternative gene names: ENSG00000181652.11; ATG9B; OTTHUMG00000158634.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1771.9481 coding 
CPAT coding probability 99.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATG9B-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDK5-2:2
4.0 lnc-CDK5-2:2
4.1 lnc-CDK5-2:2
5.0 lnc-CDK5-2:2
5.1 lnc-KMT2C-37:1
5.2 lnc-ATG9B-2:1