Transcript: lnc-ATOH8-3:1

Basic information

LNCipedia transcript ID: lnc-ATOH8-3:1 
LNCipedia gene ID: lnc-ATOH8-3
Location (hg19): chr2:85969789-85997833
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 6434 bp
Exons: 7
Sources: Nielsen et al.,2014
Alternative transcript names: l_1877_chr2:85969788-85975170_thyroid
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1798 non-coding 
CPAT coding probability 43.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATOH8-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATOH8-3:1
4.0 lnc-ATOH8-3:1
4.1 lnc-ATOH8-3:1
5.0 lnc-ATOH8-3:1
5.1 lnc-POLE4-190:1
5.2 lnc-ATOH8-3:1