Transcript: lnc-ATP2B3-1:5

Basic information

LNCipedia transcript ID: lnc-ATP2B3-1:5 
LNCipedia gene ID: lnc-ATP2B3-1
Location (hg19): chrX:152865000-152865325
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 205 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1876:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -98.4321 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP2B3-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ATP2B3-1:5
4.1 lnc-ATP2B3-1:5
5.0 lnc-ATP2B3-1:5
5.1 lnc-MAGEA11-50:11
5.2 lnc-ATP2B3-1:5