Transcript: lnc-ATP5ME-1:12

Basic information

LNCipedia transcript ID: lnc-ATP5ME-1:12 
LNCipedia gene ID: lnc-ATP5ME-1
Location (hg19): chr4:646358-656622
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8720 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000242686.2|MICT00000258955.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 170.029 coding 
CPAT coding probability 66.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATP5ME-1:12 no no no no

Available literature

  1. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP5I-1:21
5.0 lnc-ATP5I-1:21
5.1 lnc-PSAPL1-115:12
5.2 lnc-ATP5ME-1:12