Transcript: lnc-ATP5ME-1:21

Basic information

LNCipedia transcript ID: lnc-ATP5ME-1:21 
LNCipedia gene ID: lnc-ATP5ME-1
Location (hg19): chr4:646931-648921
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 881 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT094587
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.24 non-coding 
CPAT coding probability 13.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP5ME-1:21 no no no no

Available literature

  1. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP5I-1:4
4.0 lnc-ATP5I-1:4
4.1 lnc-ATP5I-1:4
5.0 lnc-ATP5I-1:4
5.1 lnc-PSAPL1-115:21
5.2 lnc-ATP5ME-1:21