Transcript: lnc-ATP5S-1:5

Basic information

LNCipedia transcript ID: lnc-ATP5S-1:5 
LNCipedia gene ID: lnc-ATP5S-1
Ensembl Gene ID: ENSG00000258857
Ensembl Transcript ID: ENST00000556713
Location (hg19): chr14:50863731-50865063
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 501 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556713; ENST00000556713.1; RP11-247L20.3-001; OTTHUMT00000410878.1; NONHSAT036796
Alternative gene names: ENSG00000258857; RP11-247L20.3; ENSG00000258857.1; OTTHUMG00000170887.1; AL359397.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5045 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP5S-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP5S-1:1
3.1 lnc-ATP5S-1:1
4.0 lnc-RP11-247L20.2.1-1:1
4.1 lnc-RP11-247L20.2.1-1:1
5.0 lnc-RP11-247L20.2.1-1:1
5.1 lnc-AP5M1-99:4
5.2 lnc-ATP5S-1:5