Transcript: lnc-ATP6V1C1-10:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1C1-10:1 
LNCipedia gene ID: lnc-ATP6V1C1-10
Ensembl Gene ID: ENSG00000254281
Ensembl Transcript ID: ENST00000517983
Location (hg19): chr8:103991013-104012412
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 563 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517983; ENST00000517983.1; KB-1507C5.4-001; OTTHUMT00000380542.1; NONHSAT128144
Alternative gene names: ENSG00000254281; KB-1507C5.4; ENSG00000254281.1; OTTHUMG00000164837.1; AP003354.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5726 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1C1-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KB-1507C5.2.1-2:1
3.1 lnc-KB-1507C5.2.1-2:1
4.0 lnc-ATP6V1C1-9:1
4.1 lnc-ATP6V1C1-9:1
5.0 lnc-ATP6V1C1-9:1
5.1 lnc-COLEC10-82:1
5.2 lnc-ATP6V1C1-10:1