Transcript: lnc-ATP6V1E2-2:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1E2-2:1 
LNCipedia gene ID: lnc-ATP6V1E2-2
Location (hg19): chr2:46520809-46523596
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 770 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004241; NONHSAT070482
Alternative gene names: XLOC_002081; linc-SRBD1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.6596 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1E2-2:1 yes no no no

Available literature

  1. Wang (2015), A novel long non-coding RNA, hypoxia-inducible factor-2α promoter upstream transcript, functions as an inhibitor of osteosarcoma stem cells in vitro., Mol Med Rep
  2. Yao (2015), Knockdown of a HIF-2α promoter upstream long noncoding RNA impairs colorectal cancer stem cell properties in vitro through HIF-2α downregulation., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1E2-2:1
3.1 lnc-ATP6V1E2-2:1
4.0 lnc-ATP6V1E2-2:1
4.1 lnc-ATP6V1E2-2:1
5.0 lnc-ATP6V1E2-2:1
5.1 lnc-ATP6V1E2-11:4
5.2 lnc-ATP6V1E2-2:1