Transcript: lnc-ATP6V1E2-2:2

Basic information

LNCipedia transcript ID: lnc-ATP6V1E2-2:2 
LNCipedia gene ID: lnc-ATP6V1E2-2
Location (hg19): chr2:46509736-46524281
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 11560 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228100.1|ENCT00000241592.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.0623 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1E2-2:2 yes no no no

Available literature

  1. Wang (2015), A novel long non-coding RNA, hypoxia-inducible factor-2α promoter upstream transcript, functions as an inhibitor of osteosarcoma stem cells in vitro., Mol Med Rep
  2. Yao (2015), Knockdown of a HIF-2α promoter upstream long noncoding RNA impairs colorectal cancer stem cell properties in vitro through HIF-2α downregulation., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP6V1E2-2:2
5.0 lnc-ATP6V1E2-2:2
5.1 lnc-ATP6V1E2-11:1
5.2 lnc-ATP6V1E2-2:2