Transcript: lnc-ATP6V1E2-2:4

Basic information

LNCipedia transcript ID: lnc-ATP6V1E2-2:4 
LNCipedia gene ID: lnc-ATP6V1E2-2
Location (hg19): chr2:46516525-46524281
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5739 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228100.1|HBMT00000803862.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.0623 non-coding 
CPAT coding probability 2.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1E2-2:4 yes no no no

Available literature

  1. Wang (2015), A novel long non-coding RNA, hypoxia-inducible factor-2α promoter upstream transcript, functions as an inhibitor of osteosarcoma stem cells in vitro., Mol Med Rep
  2. Yao (2015), Knockdown of a HIF-2α promoter upstream long noncoding RNA impairs colorectal cancer stem cell properties in vitro through HIF-2α downregulation., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP6V1E2-2:4
5.0 lnc-ATP6V1E2-2:4
5.1 lnc-ATP6V1E2-11:3
5.2 lnc-ATP6V1E2-2:4