Transcript: lnc-ATP6V1G3-4:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:1 
HGNC Gene Symbol: lnc-ATP6V1G3-4    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1222
Ensembl Gene ID: ENSG00000233410
Ensembl Transcript ID: ENST00000427439
Location (hg19): chr1:198975169-198990166
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1785 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427439; ENST00000427439.1; RP11-16L9.3-001; OTTHUMT00000087441.1; NONHSAT008670
Alternative gene names: ENSG00000233410; RP11-16L9.3; ENSG00000233410.1; OTTHUMG00000035892.1; LINC01222


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.5624 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:1 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1G3-3:2
3.1 lnc-ATP6V1G3-4:1
4.0 lnc-ATP6V1G3-4:1
4.1 lnc-ATP6V1G3-4:1
5.0 lnc-ATP6V1G3-4:1
5.1 lnc-MYOG-69:2
5.2 lnc-ATP6V1G3-4:1