Transcript: lnc-ATP6V1G3-4:12

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:12 
LNCipedia gene ID: lnc-ATP6V1G3-4
Location (hg19): chr1:198867595-198906558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2308 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229989.3|ENST00000436880.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.8127 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:12 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP6V1G3-4:12
5.0 lnc-ATP6V1G3-4:12
5.1 lnc-MYOG-69:12
5.2 lnc-ATP6V1G3-4:12