Transcript: lnc-ATP6V1G3-4:16

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:16 
LNCipedia gene ID: lnc-ATP6V1G3-4
Location (hg19): chr1:198843151-198906558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 26953 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229989.3|FTMT20100033826.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.3272 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:16 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ATP6V1G3-4:16
5.0 lnc-ATP6V1G3-4:16
5.1 lnc-MYOG-69:10
5.2 lnc-ATP6V1G3-4:16