Transcript: lnc-ATP6V1G3-4:6

Basic information

LNCipedia transcript ID: lnc-ATP6V1G3-4:6 
HGNC Gene Symbol: lnc-ATP6V1G3-4    
HGNC Full Gene Name: MIR181A1 host gene
Ensembl Gene ID: ENSG00000229989
Ensembl Transcript ID: ENST00000436880
Location (hg19): chr1:198867595-198906558
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2308 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT008664; ENST00000436880.2
Alternative gene names: ENSG00000229989.3; MIR181A1HG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8127 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1G3-4:6 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP6V1G3-4:6
4.0 lnc-ATP6V1G3-4:6
4.1 lnc-ATP6V1G3-4:6
5.0 lnc-ATP6V1G3-4:6
5.1 lnc-MYOG-69:7
5.2 lnc-ATP6V1G3-4:6