Transcript: lnc-ATXN1-3:1

Basic information

LNCipedia transcript ID: lnc-ATXN1-3:1 
LNCipedia gene ID: lnc-ATXN1-3
Location (hg19): chr6:16235150-16237168
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1862 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3123_chr6:16235149-16237168_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.8694 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN1-3:1
4.0 lnc-ATXN1-3:1
4.1 lnc-ATXN1-3:1
5.0 lnc-ATXN1-3:1
5.1 lnc-C6orf62-114:1
5.2 lnc-ATXN1-3:1