Transcript: lnc-ATXN2L-1:1

Basic information

LNCipedia transcript ID: lnc-ATXN2L-1:1 
LNCipedia gene ID: lnc-ATXN2L-1
Location (hg19): chr16:28814097-28829149
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1930 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000507031; ENST00000507031.1; RP11-1348G14.4-001; OTTHUMT00000431010.1; NONHSAT141525
Alternative gene names: ENSG00000251417; AC145285.1; ENSG00000251417.1; RP11-1348G14.4; OTTHUMG00000175740.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.4847 non-coding 
CPAT coding probability 5.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATXN2L-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATXN2L-1:1
3.1 lnc-ATXN2L-1:1
4.0 lnc-ATXN2L-1:1
4.1 lnc-ATXN2L-1:1
5.0 lnc-ATXN2L-1:1
5.1 lnc-SGF29-8:2
5.2 lnc-ATXN2L-1:1