Transcript: lnc-ATXN7L1-2:1

Basic information

LNCipedia transcript ID: lnc-ATXN7L1-2:1 
LNCipedia gene ID: lnc-ATXN7L1-2
RefSeq ID: NR_027068
Location (hg19): chr7:105205580-105221976
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 764 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027068; NR_027068.1
Alternative gene names: EFCAB10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 462.2611 coding 
CPAT coding probability 69.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ATXN7L1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN7L1-2:1
4.0 lnc-ATXN7L1-2:1
4.1 lnc-ATXN7L1-2:1
5.0 lnc-ATXN7L1-2:1
5.1 lnc-NRCAM-38:1
5.2 lnc-ATXN7L1-2:1