Transcript: lnc-B3GLCT-1:3

Basic information

LNCipedia transcript ID: lnc-B3GLCT-1:3 
LNCipedia gene ID: lnc-B3GLCT-1
Location (hg19): chr13:32011875-32017603
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 234 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021747; NONHSAT033077
Alternative gene names: XLOC_010339; linc-RXFP2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.5264 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GLCT-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-B3GALTL-1:1
3.1 lnc-B3GALTL-1:1
4.0 lnc-B3GALTL-1:1
4.1 lnc-B3GALTL-1:1
5.0 lnc-B3GALTL-1:1
5.1 lnc-PDS5B-12:3
5.2 lnc-B3GLCT-1:3