Transcript: lnc-B3GNT10-21:17

Basic information

LNCipedia transcript ID: lnc-B3GNT10-21:17 
LNCipedia gene ID: lnc-B3GNT10-21
Location (hg19): chr9:123606991-123613802
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1033 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT134526; ENST00000588973.1; ENST00000588973.5
Alternative gene names: ENSG00000226752.3; PSMD5-AS1; ENSG00000226752.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.7467 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-21:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNTRL-1:11
4.0 PSMD5-AS1:11
4.1 PSMD5-AS1:11
5.0 PSMD5-AS1:11
5.1 lnc-B3GNT10-1:17
5.2 lnc-B3GNT10-21:17