Transcript: lnc-B3GNT10-5:2

Basic information

LNCipedia transcript ID: lnc-B3GNT10-5:2 
LNCipedia gene ID: lnc-B3GNT10-5
Location (hg19): chr9:122809399-122814058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT134501; FPKM1_group_33807_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.213 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GNT10-5:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-295D22.1.1-5:4
4.0 lnc-RP11-295D22.1.1-5:4
4.1 lnc-RP11-295D22.1.1-5:4
5.0 lnc-RP11-295D22.1.1-5:4
5.1 lnc-B3GNT10-3:2
5.2 lnc-B3GNT10-5:2