Transcript: lnc-B4GALNT1-1:8

Basic information

LNCipedia transcript ID: lnc-B4GALNT1-1:8 
LNCipedia gene ID: lnc-B4GALNT1-1
Location (hg19): chr12:58006122-58011828
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2083 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000444467.1; AC025165.8-001; OTTHUMT00000326568.1; NONHSAT028941
Alternative gene names: ENSG00000224713.1; AC025165.8; OTTHUMG00000152518.1; ENSG00000224713.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 320.968 coding 
CPAT coding probability 5.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-B4GALNT1-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B4GALNT1-2:2
4.0 lnc-B4GALNT1-1:8
4.1 lnc-B4GALNT1-1:8
5.0 lnc-B4GALNT1-1:8
5.1 lnc-PMEL-64:7
5.2 lnc-B4GALNT1-1:8