Transcript: lnc-BARD1-1:1

Basic information

LNCipedia transcript ID: lnc-BARD1-1:1 
LNCipedia gene ID: lnc-BARD1-1
Ensembl Gene ID: ENSG00000197585
Ensembl Transcript ID: ENST00000412896
Location (hg19): chr2:215114764-215548970
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 442 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412896.1; AC107218.3-002; OTTHUMT00000337270.2; NONHSAT076721; ENST00000412896.5
Alternative gene names: ENSG00000197585.5; AC107218.3; OTTHUMG00000154823.2; ENSG00000197585.9; AC068051.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.4114 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BARD1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BARD1-1:1
4.0 lnc-BARD1-1:1
4.1 lnc-BARD1-1:1
5.0 lnc-BARD1-1:1
5.1 lnc-FN1-8:1
5.2 lnc-BARD1-1:1