Transcript: lnc-BASP1-2:1

Basic information

LNCipedia transcript ID: lnc-BASP1-2:1 
LNCipedia gene ID: lnc-BASP1-2
Location (hg19): chr5:17063337-17065809
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 576 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00010631
Alternative gene names: XLOC_004306; linc-BASP1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1498 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BASP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-3:1
3.1 lnc-BASP1-2:1
4.0 lnc-BASP1-2:1
4.1 lnc-BASP1-2:1
5.0 lnc-BASP1-2:1
5.1 lnc-CARD6-193:1
5.2 lnc-BASP1-2:1