Transcript: lnc-BASP1-6:1

Basic information

LNCipedia transcript ID: lnc-BASP1-6:1 
LNCipedia gene ID: lnc-BASP1-6
Ensembl Gene ID: ENSG00000246214
Ensembl Transcript ID: ENST00000499131
RefSeq ID: NR_109946
Location (hg19): chr5:16616035-16630078
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1674 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499131; ENST00000499131.1; RP11-260E18.1-001; OTTHUMT00000366179.1; NONHSAT100609; NR_109946; NR_109946.1
Alternative gene names: ENSG00000246214; RP11-260E18.1; ENSG00000246214.1; OTTHUMG00000161824.1; AC022113.1; LOC101929524


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.6101 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BASP1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-5:1
3.1 lnc-BASP1-6:1
4.0 lnc-BASP1-6:1
4.1 lnc-BASP1-6:1
5.0 lnc-BASP1-6:1
5.1 lnc-CARD6-195:2
5.2 lnc-BASP1-6:1