Transcript: lnc-BASP1-6:3

Basic information

LNCipedia transcript ID: lnc-BASP1-6:3 
LNCipedia gene ID: lnc-BASP1-6
Ensembl Gene ID: ENSG00000250415
Ensembl Transcript ID: ENST00000504935
Location (hg19): chr5:16617334-16621385
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 704 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504935.1; CTC-461F20.1-001; OTTHUMT00000366178.1; NONHSAT100611
Alternative gene names: ENSG00000250415.1; CTC-461F20.1; OTTHUMG00000161823.1; AC022113.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -284.4422 non-coding 
CPAT coding probability 1.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BASP1-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BASP1-5:1
4.0 lnc-BASP1-6:3
4.1 lnc-BASP1-6:3
5.0 lnc-BASP1-6:3
5.1 lnc-CARD6-195:3
5.2 lnc-BASP1-6:3