Transcript: lnc-BATF3-2:15

Basic information

LNCipedia transcript ID: lnc-BATF3-2:15 
LNCipedia gene ID: lnc-BATF3-2
Ensembl Gene ID: ENSG00000235862
Ensembl Transcript ID: ENST00000427949
Location (hg19): chr1:212797626-212800113
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2225 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427949.1; RP11-338C15.5-001; OTTHUMT00000098530.1
Alternative gene names: ENSG00000235862.2; RP11-338C15.5; OTTHUMG00000041085.1; AL590648.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 63.001 coding 
CPAT coding probability 99.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BATF3-2:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BATF3-3:1
4.0 lnc-BATF3-3:1
4.1 lnc-BATF3-2:15
5.0 lnc-BATF3-2:15
5.1 lnc-IRF6-55:15
5.2 lnc-BATF3-2:15