Transcript: lnc-BBOX1-13:2

Basic information

LNCipedia transcript ID: lnc-BBOX1-13:2 
LNCipedia gene ID: lnc-BBOX1-13
Location (hg19): chr11:27223794-27225879
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1083 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000001798.1|ENCT00000065282.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.6155 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BBOX1-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-BBOX1-13:2
5.0 lnc-BBOX1-13:2
5.1 lnc-QSER1-57:2
5.2 lnc-BBOX1-13:2