Transcript: lnc-BBOX1-1:2

Basic information

LNCipedia transcript ID: lnc-BBOX1-1:2 
LNCipedia gene ID: lnc-BBOX1-1
Ensembl Gene ID: ENSG00000254862
Ensembl Transcript ID: ENST00000529258
Location (hg19): chr11:27493345-27503980
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 470 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529258.1; RP11-159H22.2-001; OTTHUMT00000387959.1; NONHSAT018489
Alternative gene names: ENSG00000254862.1; RP11-159H22.2; OTTHUMG00000166124.1; ENSG00000254862.5; AC100771.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.3245 non-coding 
CPAT coding probability 6.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BBOX1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BBOX1-1:2
4.0 lnc-BBOX1-1:2
4.1 lnc-BBOX1-1:2
5.0 lnc-BBOX1-1:2
5.1 lnc-QSER1-53:4
5.2 lnc-BBOX1-1:2