Transcript: lnc-BBOX1-2:1

Basic information

LNCipedia transcript ID: lnc-BBOX1-2:1 
LNCipedia gene ID: lnc-BBOX1-2
Location (hg19): chr11:27238581-27240315
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1061 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT018480
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -222.9298 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BBOX1-2:1 no no no no

Available literature

  1. Gu (2015), LncRNA expression profile reveals the potential role of lncRNAs in gastric carcinogenesis., Cancer Biomark


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BBOX1-2:1
4.0 lnc-BBOX1-2:1
4.1 lnc-BBOX1-2:1
5.0 lnc-BBOX1-2:1
5.1 lnc-QSER1-56:1
5.2 lnc-BBOX1-2:1