Transcript: lnc-BBOX1-4:1

Basic information

LNCipedia transcript ID: lnc-BBOX1-4:1 
LNCipedia gene ID: lnc-BBOX1-4
Location (hg19): chr11:27505397-27505675
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 279 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT018490
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
YGTRYGASLRKMVK 94.7368421052632% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score 45.3294 non-coding 
CPAT coding probability 13.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BBOX1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BBOX1-4:1
4.0 lnc-BBOX1-4:1
4.1 lnc-BBOX1-4:1
5.0 lnc-BBOX1-4:1
5.1 lnc-QSER1-52:1
5.2 lnc-BBOX1-4:1