Transcript: lnc-BCKDHB-1:7

Basic information

LNCipedia transcript ID: lnc-BCKDHB-1:7 
LNCipedia gene ID: lnc-BCKDHB-1
Location (hg19): chr6:81153173-81175572
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 732 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011334; ENST00000427048; ENST00000427048.1; RP11-250B2.3-002; OTTHUMT00000041322.1; NONHSAT113731
Alternative gene names: XLOC_005365; linc-TPBG-3; ENSG00000233967; RP11-250B2.3; ENSG00000233967.1; OTTHUMG00000015092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.7562 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCKDHB-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCKDHB-1:8
3.1 lnc-BCKDHB-1:7
4.0 lnc-BCKDHB-1:7
4.1 lnc-BCKDHB-1:7
5.0 lnc-BCKDHB-1:7
5.1 lnc-CYB5R4-28:10
5.2 lnc-BCKDHB-1:7