Transcript: lnc-BCL11B-7:1

Basic information

LNCipedia transcript ID: lnc-BCL11B-7:1 
LNCipedia gene ID: lnc-BCL11B-7
Ensembl Gene ID: ENSG00000258379
Ensembl Transcript ID: ENST00000555889
Location (hg19): chr14:98252902-98255593
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555889.1; RP11-204N11.2-001; OTTHUMT00000413582.1; NONHSAT039580
Alternative gene names: ENSG00000258379.1; RP11-204N11.2; OTTHUMG00000171469.1; AL355097.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.9607 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL11B-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-204N11.1.1-1:1
4.0 lnc-RP11-204N11.1.1-1:1
4.1 lnc-RP11-204N11.1.1-1:1
5.0 lnc-RP11-204N11.1.1-1:1
5.1 lnc-CCDC85C-34:1
5.2 lnc-BCL11B-7:1