Transcript: lnc-BCL2L11-3:2

Basic information

LNCipedia transcript ID: lnc-BCL2L11-3:2 
LNCipedia gene ID: lnc-BCL2L11-3
Location (hg19): chr2:112249107-112258585
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1954 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002978; NONHSAT073655
Alternative gene names: XLOC_001625; linc-MERTK-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.6514 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL2L11-3:2 no no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCL2L11-3:2
3.1 lnc-BCL2L11-3:2
4.0 lnc-BCL2L11-3:2
4.1 lnc-BCL2L11-3:2
5.0 lnc-BCL2L11-3:2
5.1 lnc-SULT1C4-42:2
5.2 lnc-BCL2L11-3:2