Transcript: lnc-BCL2L11-3:6

Basic information

LNCipedia transcript ID: lnc-BCL2L11-3:6 
LNCipedia gene ID: lnc-BCL2L11-3
Ensembl Gene ID: ENSG00000240350
Ensembl Transcript ID: ENST00000627971
Location (hg19): chr2:112249133-112328551
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 239 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000627971.1
Alternative gene names: ENSG00000240350.2; AC017002.1; AC017002.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.3269 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BCL2L11-3:6 no no no no

Available literature

  1. Gao (2014), Differential expression of long noncoding RNA in primary and recurrent nasopharyngeal carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BCL2L11-3:6
4.1 lnc-BCL2L11-3:6
5.0 lnc-BCL2L11-3:6
5.1 lnc-SULT1C4-42:5
5.2 lnc-BCL2L11-3:6