Transcript: lnc-BDH1-2:1

Basic information

LNCipedia transcript ID: lnc-BDH1-2:1 
LNCipedia gene ID: lnc-BDH1-2
Ensembl Gene ID: ENSG00000235126
Ensembl Transcript ID: ENST00000438408
Location (hg19): chr3:197171932-197185194
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 558 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005932; ENST00000438408; ENST00000438408.1; AC128709.3-001; OTTHUMT00000340291.1; NONHSAT094402
Alternative gene names: XLOC_003402; linc-DLG1-2; ENSG00000235126; AC128709.3; ENSG00000235126.1; OTTHUMG00000155481.1; AC128709.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.8068 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BDH1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BDH1-2:1
3.1 lnc-BDH1-2:1
4.0 lnc-BDH1-2:1
4.1 lnc-BDH1-2:1
5.0 lnc-BDH1-2:1
5.1 lnc-IQCG-31:1
5.2 lnc-BDH1-2:1