Transcript: lnc-BEND2-2:1

Basic information

LNCipedia transcript ID: lnc-BEND2-2:1 
LNCipedia gene ID: lnc-BEND2-2
Location (hg19): chrX:17819784-17855852
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 465 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000509491.1; RP3-389A20.4-001; OTTHUMT00000055935.1
Alternative gene names: ENSG00000248906.1; RP3-389A20.4; OTTHUMG00000021207.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -593.9916 non-coding 
CPAT coding probability 93.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BEND2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BEND2-2:1
4.0 lnc-BEND2-2:1
4.1 lnc-BEND2-2:1
5.0 lnc-BEND2-2:1
5.1 lnc-PCSK1N-164:1
5.2 lnc-BEND2-2:1