Transcript: lnc-BEST3-1:1

Basic information

LNCipedia transcript ID: lnc-BEST3-1:1 
LNCipedia gene ID: lnc-BEST3-1
Ensembl Gene ID: ENSG00000247131
Ensembl Transcript ID: ENST00000501387
RefSeq ID: NR_110072
Location (hg19): chr12:70107413-70132348
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2538 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501387; ENST00000501387.1; RP11-588G21.2-001; OTTHUMT00000403871.1; NONHSAT029381; NR_110072; ENST00000501387.5; NR_110072.1
Alternative gene names: ENSG00000247131; RP11-588G21.2; ENSG00000247131.1; OTTHUMG00000169398.1; ENSG00000247131.5; AC025263.1; LOC101928002


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.32 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BEST3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BEST3-1:1
3.1 lnc-BEST3-1:1
4.0 lnc-BEST3-1:1
4.1 lnc-BEST3-1:1
5.0 lnc-BEST3-1:1
5.1 lnc-LRRC10-1:3
5.2 lnc-BEST3-1:1