Transcript: lnc-BEX3-2:4

Basic information

LNCipedia transcript ID: lnc-BEX3-2:4 
LNCipedia gene ID: lnc-BEX3-2
Ensembl Gene ID: ENSG00000281091
Ensembl Transcript ID: ENST00000628546
Location (hg19): chrX:102659746-102663227
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628546.1
Alternative gene names: ENSG00000281091.2; RP13-349O20.2; AL606763.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.0058 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BEX3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NGFRAP1-2:6
4.1 lnc-NGFRAP1-2:6
5.0 lnc-NGFRAP1-2:6
5.1 lnc-TEX13C-230:4
5.2 lnc-BEX3-2:4