Transcript: lnc-BIRC2-2:2

Basic information

LNCipedia transcript ID: lnc-BIRC2-2:2 
LNCipedia gene ID: lnc-BIRC2-2
Ensembl Gene ID: ENSG00000255482
Ensembl Transcript ID: ENST00000529278
RefSeq ID: NR_135076
Location (hg19): chr11:102337986-102369532
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 494 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000529278.1; NR_135076.1
Alternative gene names: ENSG00000255482.1; RP11-315O6.2; AP001830.2; LOC102723838


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.518 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BIRC2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-315O6.2.1-2:1
4.1 lnc-RP11-315O6.2.1-2:1
5.0 lnc-RP11-315O6.2.1-2:1
5.1 lnc-DYNC2H1-8:1
5.2 lnc-BIRC2-2:2