Transcript: lnc-BIRC2-4:2

Basic information

LNCipedia transcript ID: lnc-BIRC2-4:2 
LNCipedia gene ID: lnc-BIRC2-4
Ensembl Gene ID: ENSG00000256916
Ensembl Transcript ID: ENST00000542119
Location (hg19): chr11:102478098-102498801
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 743 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542119.1; RP11-817J15.2-001; OTTHUMT00000398126.1; NONHSAT023887
Alternative gene names: ENSG00000256916.1; RP11-817J15.2; OTTHUMG00000168097.1; AP000851.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.9279 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BIRC2-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-817J15.3.1-2:2
4.0 lnc-RP11-817J15.3.1-2:2
4.1 lnc-RP11-817J15.3.1-1:10
5.0 lnc-RP11-817J15.3.1-1:10
5.1 lnc-DYNC2H1-39:2
5.2 lnc-BIRC2-4:2