Transcript: lnc-BLCAP-1:2

Basic information

LNCipedia transcript ID: lnc-BLCAP-1:2 
LNCipedia gene ID: lnc-BLCAP-1
Location (hg19): chr20:36120874-36137633
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 714 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028042; ENST00000411780.1; RP11-425M5.5-002; OTTHUMT00000276659.1; NONHSAT079620
Alternative gene names: XLOC_013732; linc-GHRH; ENSG00000235167.1; RP11-425M5.5; OTTHUMG00000032422.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.6803 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BLCAP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BLCAP-1:2
3.1 lnc-BLCAP-1:2
4.0 lnc-BLCAP-1:2
4.1 lnc-BLCAP-1:2
5.0 lnc-BLCAP-1:2
5.1 lnc-EIF6-39:4
5.2 lnc-BLCAP-1:2