Transcript: lnc-BLCAP-1:3

Basic information

LNCipedia transcript ID: lnc-BLCAP-1:3 
LNCipedia gene ID: lnc-BLCAP-1
Location (hg19): chr20:36120936-36124164
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 594 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028043; ENST00000447625.1; RP11-425M5.5-001; OTTHUMT00000079119.2; NONHSAT079621
Alternative gene names: XLOC_013732; linc-GHRH; ENSG00000235167.1; RP11-425M5.5; OTTHUMG00000032422.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -283.9354 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BLCAP-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BLCAP-1:3
3.1 lnc-BLCAP-1:3
4.0 lnc-BLCAP-1:3
4.1 lnc-BLCAP-1:3
5.0 lnc-BLCAP-1:3
5.1 lnc-EIF6-39:6
5.2 lnc-BLCAP-1:3