Transcript: lnc-BLOC1S4-2:2

Basic information

LNCipedia transcript ID: lnc-BLOC1S4-2:2 
LNCipedia gene ID: lnc-BLOC1S4-2
Location (hg19): chr4:6734577-6742413
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2794 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000067635.1|ENCT00000316481.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 36.2995 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BLOC1S4-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CNO-2:1
5.0 lnc-CNO-2:1
5.1 lnc-GPR78-29:2
5.2 lnc-BLOC1S4-2:2