Transcript: lnc-BMF-1:1

Basic information

LNCipedia transcript ID: lnc-BMF-1:1 
LNCipedia gene ID: lnc-BMF-1
Ensembl Gene ID: ENSG00000259584
Ensembl Transcript ID: ENST00000560376
Location (hg19): chr15:40367405-40370905
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 864 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560376.1; RP11-521C20.2-001; OTTHUMT00000418272.1; NONHSAT041807
Alternative gene names: ENSG00000259584.1; RP11-521C20.2; OTTHUMG00000172393.1; AC021755.3; AC021755.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -348.7825 non-coding 
CPAT coding probability 69.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BMF-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BMF-1:1
4.0 lnc-BMF-1:1
4.1 lnc-BMF-1:1
5.0 lnc-BMF-1:1
5.1 lnc-VPS39-49:1
5.2 lnc-BMF-1:1