Transcript: lnc-BMPER-2:1

Basic information

LNCipedia transcript ID: lnc-BMPER-2:1 
LNCipedia gene ID: lnc-BMPER-2
Ensembl Gene ID: ENSG00000236212
Ensembl Transcript ID: ENST00000446484
Location (hg19): chr7:34249138-34295955
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012990; ENST00000446484; ENST00000446484.1; AC009262.2-001; OTTHUMT00000328965.1; NONHSAT120037
Alternative gene names: XLOC_006040; linc-NPSR1; ENSG00000236212; AC009262.2; ENSG00000236212.1; OTTHUMG00000153006.1; AC009262.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.7038 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMPER-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMPER-2:1
3.1 lnc-BMPER-2:1
4.0 lnc-BMPER-2:1
4.1 lnc-BMPER-2:1
5.0 lnc-BMPER-2:1
5.1 lnc-CCDC129-33:1
5.2 lnc-BMPER-2:1