Transcript: lnc-BMS1-16:1

Basic information

LNCipedia transcript ID: lnc-BMS1-16:1 
LNCipedia gene ID: lnc-BMS1-16
Location (hg19): chr10:42388477-42396474
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1206 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017956; NONHSAT012849
Alternative gene names: XLOC_008786; linc-ZNF25-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.8882 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BMS1-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCNYL2-1:1
3.1 lnc-CCNYL2-1:1
4.0 lnc-CCNYL2-1:1
4.1 lnc-CCNYL2-1:1
5.0 lnc-CCNYL2-1:1
5.1 lnc-NPY4R2-106:1
5.2 lnc-BMS1-16:1