Transcript: lnc-BNIP1-3:1

Basic information

LNCipedia transcript ID: lnc-BNIP1-3:1 
LNCipedia gene ID: lnc-BNIP1-3
Location (hg19): chr5:172812059-172897937
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3283 bp
Exons: 7
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010177; NONHSAT105180
Alternative gene names: XLOC_004640; linc-CPEB4-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.4903 non-coding 
CPAT coding probability 5.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BNIP1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BNIP1-3:1
3.1 lnc-BNIP1-3:1
4.0 lnc-BNIP1-3:1
4.1 lnc-BNIP1-3:1
5.0 lnc-BNIP1-3:1
5.1 lnc-ATP6V0E1-19:1
5.2 lnc-BNIP1-3:1