Transcript: lnc-BNIP3-2:1

Basic information

LNCipedia transcript ID: lnc-BNIP3-2:1 
LNCipedia gene ID: lnc-BNIP3-2
Location (hg19): chr10:133730128-133733387
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1048 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018649; NONHSAT017056
Alternative gene names: XLOC_009000; linc-TCERG1L-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.3753 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BNIP3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BNIP3-2:1
3.1 lnc-BNIP3-2:1
4.0 lnc-BNIP3-2:1
4.1 lnc-BNIP3-2:1
5.0 lnc-BNIP3-2:1
5.1 lnc-CALY-36:1
5.2 lnc-BNIP3-2:1